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Bioinformatics, Computational and Systems Biology
Poster Session

Bioinformatics, Computational and Systems Biology - Poster Session B

Thursday, October 24, 2024
2:45 PM - 3:45 PM EST
Location: Exhibit Hall E, F & G

Sponsored By 

    Presentations:

    • 2:45 PM - 3:45 PM EST
      Comparing the Pore Architecture of Claudin Pores

      Presenting Author: Alem Yirefu – Syracuse University

      Primary Investigator: Shikha Nangia, PhD (she/her/hers) – Syracuse Univeristy

    • 2:45 PM - 3:45 PM EST
      Efficacy of K-Nearest Neighbors Algorithm for Diabetes Onset Classification

      Presenting Author: Milad Jaffari – Biomedical Engineering Society

      Presenting Author: Benjamin Breslov – Columbia University

      Presenting Author: Leah Johnson – Worcester Polytechnic Institute

      Co-Author: Brendan Dodier – Worcester Polytechnic Institute

      Co-Author: Brandon Morales – Worcester Polytechnic Institute

      Last Author: TAIMOOR AFZAL – Worcester Polytechnic Institute

    • 2:45 PM - 3:45 PM EST
      Data-Driven Approaches to Investigate Cardiotoxicity Using Human Induced Pluripotent Stem Cell-Based High-Throughput Drug Screening

      Presenting Author: Danny Vu (he/him/his) – Syracuse University

      Primary Investigator: Zhen Ma, PhD (he/him/his) – Syracuse University

      Co-Author: Andrew Kowalczewski, M.S. (he/him/his) – Syracuse University

    • 2:45 PM - 3:45 PM EST
      Elucidating intracellular glycosylation fluxes in CHO cell culture production of Immunoglobulin G

      Presenting Author: Shriramprasad Venkatesan, PhD (he/him/his) – University at Buffalo - SUNY

      Last Author: Rudiyanto Gunawan, PhD (he/him/his) – University at Buffalo - SUNY

    • 2:45 PM - 3:45 PM EST
      Computationally investigating the effect of point mutations on drug targets for Alzheimer’s disease

      Presenting Author: Nida Shah (she/her/hers) – University of Maryland College Park

      Primary Investigator: Jeffery Klauda, PhD – University of Maryland College Park

      Last Author: Tejaswi Tammareddy – University of Maryland College Park

    • 2:45 PM - 3:45 PM EST
      Establishing a hybrid parallel agent-based model of diffusive transport

      Presenting Author: Runxin Wu (she/her/hers) – Duke University

      Co-Author: Benjamin Johns (he/him/his) – Stanford University

      Co-Author: Mohammed Shihab Kabir (he/him/his) – Duke University

      Co-Author: Cyrus Tanade, MEng (he/him/his) – Duke University

      Co-Author: William D. Ladd, MS – Duke University

      Primary Investigator: Amanda Randles, PhD (she/her/hers) – Duke University

    • 2:45 PM - 3:45 PM EST
      Continuous Monitoring of Sweat by Laser-Induced Graphene

      Presenting Author: Alexander Rohleder – University of Southern California

      Co-Author: Victor Ong – University of Southern California

      Co-Author: Michael J. Lee (he/him/his) – University of Southern California

      Co-Author: Haozheng Ma (he/him/his) – University of Southern California

      Primary Investigator: Maral Mousavi – University of Southern California

      Co-Author: Mihir Tilak

    • 2:45 PM - 3:45 PM EST
      Critical phenomenon in immune dynamics: A percolation-type criticality threshold controls immune protein coating of surfaces

      Presenting Author: Sahil Kulkarni (he/him/his) – University of Pennsylvania

      Primary Investigator: Ravi Radhakrishnan, Phd – University of Pennsylvania, Department of Bioengineering

      Co-Author: Zhicheng Wang – University of Pennsylvania

      Co-Author: Jacob W. Meyerson – University of Pennsylvania

      Co-Author: Jacob S. Brenner, MD, PhD – University of Pennsylvania

    • 2:45 PM - 3:45 PM EST
      Development of Method for Quantitative Assessment of Digital Pathology in Woodchuck HCC Model Using Image Segmentation and Image Processing

      Presenting Author: Joshua Cheuk (he/him/his) – National Institute of Biomedical Imaging and Bioengineering

      Co-Author: Nicole Varble, PhD – Philips

      Co-Author: Ming Li, PhD (she/her/hers) – National Institutes of Health

      Co-Author: Andrew S. Mikhail, PhD – Center for Interventional Oncology, Radiology and Imaging Sciences, Clinical Center, National Institutes of Health

      Co-Author: William F. Pritchard, MD PhD – Center for Interventional Oncology, Radiology and Imaging Sciences, Clinical Center, National Institutes of Health

      Co-Author: John W. Karanian, PhD – Center for Interventional Oncology, Radiology and Imaging Sciences, Clinical Center, National Institutes of Health

      Co-Author: Laetitia Saccenti – National Institutes of Health

      Primary Investigator: Bradford J. Wood, MD (he/him/his) – National Institutes of Health

      Co-Author: Robert Morhard, PhD (he/him/his) – Center for Interventional Oncology, Radiology and Imaging Sciences, Clinical Center, National Institutes of Health

    • 2:45 PM - 3:45 PM EST
      DECODING HAND MOVEMENTS FROM HEALTHY ELECTROMYOGRAPHIC SIGNALS TOWARD A TRANSFERABLE NEAR-NATURAL PROSTHESIS

      Presenting Author: Caly Ferguson – University of Maryland, Baltimore County

      Co-Author: Dinyi Pei – University of Maryland, Baltimore County

      Co-Author: Parthan Olikkal, MS – University of Maryland, Baltimore County

      Co-Author: Zainab Idowu – University of Maryland, Baltimore County

      Last Author: Ramana Vinjamuri – University of Maryland, Baltimore County

    • 2:45 PM - 3:45 PM EST
      Exploring mechanistic parameters and clinical observations as potential biomarkers of response to CCR5Δ32 HSCT in HIV infection

      Presenting Author: Jason Chang (he/him/his) – Johns Hopkins University

      Primary Investigator: Feilim Mac Gabhann, PhD – Johns Hopkins University

    • 2:45 PM - 3:45 PM EST
      Computational methods for spatially-informed gene expression comparison for spatially resolved transcriptomics data across technologies

      Presenting Author: Vivien Jiang – Johns Hopkins University

      Primary Investigator: Jean Fan, PhD – Johns Hopkins University

      Co-Author: Kalen Clifton (she/her/hers) – Johns Hopkins University

    • 2:45 PM - 3:45 PM EST
      Development of a Diagnostic Classifier for Early Mild Cognitive Impairment Using Bile Acid Measurements

      Presenting Author: Joshua Chuah, PhD (he/him/his) – Union College

      Last Author: Juergen Hahn, PhD – Rensselaer Polytechnic Institute

    • 2:45 PM - 3:45 PM EST
      Dual Deep Neural Network-Based Tools for Genomic Splice Site Prediction Across Multiple Species

      Presenting Author: Alan Mao (he/him/his) – Johns Hopkins University

      Co-Author: Kuan-Hao Chao, MSE – Johns Hopkins University

      Co-Author: Mihaela Pertea, PhD – Johns Hopkins University

      Primary Investigator: Steven L. Salzberg, PhD (he/him/his) – Johns Hopkins University

    • 2:45 PM - 3:45 PM EST
      Fallibility of Generative AI Large Language Models: Acceptance of Misinformation with Repetitive Engagement

      Co-Author: Katelyn Rohrer (she/her/hers) – University of Arizona

      Presenting Author: Jordan Rodriguez – University of Arizona

      Co-Author: Luis De Anda (they/them/theirs) – Arizona Center for Accelerated Biomedical Innovation

      Co-Author: Zachary Hansen – University of Arizona

      Co-Author: Camila Grubb – University of Arizona

      Primary Investigator: Marvin J. Slepian, MD, JD – Arizona Center for Accelerated Biomedical Innovation

    • 2:45 PM - 3:45 PM EST
      Epigenetic Insights into Parkinson's Disease Progression: DNA Methylation Profiling across Disease Subtypes

      Presenting Author: Nadine Grant – Rensselaer Polytechnic Institute

      Co-Author: Diego Machado Reyes – Rensselaer Polytechnic Institute

      Last Author: Pingkun Yan, PhD – Rensselaer Polytechnic Institute

    • 2:45 PM - 3:45 PM EST
      Fiber Alignment Induces Aortic Valve Calcification in a Multiscale Computational Model

      Presenting Author: Javid Azimi Boulali (he/him/his) – Binghamton University

      Co-Author: Mei-Hsiu Chen, PHD (she/her/hers) – Binghamton University

      Co-Author: Gretchen Mahler, PhD – Binghamton University

      Co-Author: Bruce Murray, phd – Binghamton University

      Last Author: Peter Huang, PhD – Binghamton University

    • 2:45 PM - 3:45 PM EST
      Exploring the Association Between Retinal Microstructure and White Matter Lesions on MRI in Cognitively Healthy Older Adults: Insights from the B-NET-EYE Study

      Presenting Author: Alma Moreno-Dominguez (she/her/hers) – Wake Forest University BME-REU internship Program/ University of Texas at El Paso

      Co-Author: Ashley Wells (she/her/hers) – Wake Forest School of Medicine

      Co-Author: Levi D. Kauffman, MD – Wake Forest School of Medicine, Department of Ophthalmology

      Co-Author: Margaret Greven, MD – Wake Forest School of Medicine, Department of Ophthalmology

      Co-Author: Gillian Treadwell, MD – Wake Forest School of Medicine, Department of Ophthalmology

      Co-Author: J. Brent Bond, MD – Wake Forest School of Medicine, Department of Ophthalmology

      Co-Author: Haiying Chen, MD, PhD – Wake Forest School of Medicine

      Co-Author: Michael E. Miller – Wake Forest School of Medicine

      Co-Author: Christina Hugenschmidt, PhD – Wake Forest School of Medicine, Department of Gerontology and Geriatric Medicine

      Co-Author: Alexis D. Tanase, MS – Wake Forest University School of Medicine, Department of Radiology

      Co-Author: Paul J. Laurienti, MD, PhD – Wake Forest University School of Medicine, Department of Radiology

      Co-Author: Jeff D. Williamson, MD, MS – Wake Forest School of Medicine

      Co-Author: Steve B. Kritchevsky, PhD – Wake Forest University School of Medicine, Department of Internal Medicine

      Last Author: Atalie C. Thompson, MD, MPH – Wake Forest School of Medicine, Department of Ophthalmology

    • 2:45 PM - 3:45 PM EST
      FusOn-pLM: a Fusion Oncoprotein-Specific Language Model

      Presenting Author: Sophia Vincoff (she/her/hers) – Duke University

      Co-Author: Kseniia Kholina – Duke University

      Co-Author: Shrey Goel (he/him/his) – Duke University

      Primary Investigator: Pranam Chatterjee – Duke University

      Co-Author: Rishab Pulugurta (he/him/his) – Duke University

      Co-Author: Pranay Vure (he/him/his) – Duke University

    • 2:45 PM - 3:45 PM EST
      Characterizing Brain Tumor Heterogeneity from Omics Analysis in CNS Neoplasms

      Presenting Author: Dipon Roy (he/him/his) – Rowan University

      Primary Investigator: Mary Staehle, PhD (she/her/hers) – Rowan University

    • 2:45 PM - 3:45 PM EST
      Genetic network for discovering prediction marker of relapse of chemotherapy resistant TNBC

      Presenting Author: Jinhee Mun – Ulsan National Institute of Science and Technology

      Primary Investigator: Jinmyoung Joo – Ulsan National Institute of Science and Technology (UNIST)

    • 2:45 PM - 3:45 PM EST
      CoDIAC (Comprehensive domain interface analysis of contacts) : A bioinformatics toolkit for feature extraction and analysis

      Presenting Author: Alekhya Kandoor, MS – University of Virginia

      Co-Author: Gabrielle Martinez (she/her/hers) – University of Virginia

      Co-Author: Saqib Rizvi – university of virginia

      Last Author: Julianna hitchcock – university of virginia

      Primary Investigator: Kristen Naegle, PhD (she/her/hers) – University of Virginia

    • 2:45 PM - 3:45 PM EST
      Considering Size, Shape, and Hemodynamics: A Synergistic Approach in Risk of Rupture Assessment of Cerebral Aneurysms

      Presenting Author: Hemanth Krishna Taduka, B.Tech, MS (he/him/his) – CARA Systems Inc

      Primary Investigator: Prithvinath Reddy Garigapuram, BTech, MS (he/him/his) – CARA Systems Inc.

      Co-Author: Srushti Katore, MS (she/her/hers) – CARA Systems Inc

    • 2:45 PM - 3:45 PM EST
      Continuous Wavelet based Transfer Function Analysis for Baroreflex Sensitivity

      Presenting Author: Surat Kulapatana, MD (he/him/his) – Vanderbilt University

      Co-Author: Marcus Thudium – University of Bonn

      Co-Author: Evgeniya Kornilov – Weizmann Institute of Science

      Co-Author: Stefan Moestl – Institute of Aerospace Medicine, German Aerospace Center

      Co-Author: Fabian Hoffmann – Institute of Aerospace Medicine, German Aerospace Center

      Co-Author: Alex Hoff – Institute of Aerospace Medicine, German Aerospace Center

      Co-Author: Vasille Urechie – Vanderbilt University Medical Center

      Co-Author: Stefano Rigo, MD (he/him/his) – Humanitas University

      Co-Author: Karsten Heusser – Institute of Aerospace Medicine, German Aerospace Center

      Co-Author: Jens Tank, MD, PhD – Institute of Aerospace Medicine, German Aerospace Center

      Last Author: Andre' Diedrich, MD, PhD (he/him/his) – Vanderbilt University

      Co-Author: Italo Biaggioni – Vanderbilt University Medical Center

    • 2:45 PM - 3:45 PM EST
      Creation and Validation of LIMÓN - Longitudinal Individual Microbial Omics Networks

      Co-Author: Suzanne Alvernaz – Department of Biomedical Engineering, College of Engineering and Medicine, University of Illinois Chicago

      Presenting Author: Beatriz Penalver Bernabe, PhD;MS (she/her/hers) – Department of Biomedical Engineering, College of Engineering and Medicine, Univeristy of Illinois at Chicago

    • 2:45 PM - 3:45 PM EST
      ESTIMATING TENOFOVIR and ATAZANAVIR DIFFUSION LENGTH IN THE LOBULE FROM IR-MALDESI IMAGE DATA

      Presenting Author: Sasan Paryad Zanjani, PhD – University of Delaware

      Co-Author: Michael J. Piovoso, PhD (he/him/his) – University of Delaware

      Co-Author: Elias Rosen – University of North Carolina

      Co-Author: Ryan Zurakowski, PhD (he/him/his) – University of Delaware

    • 2:45 PM - 3:45 PM EST
      Designing host-associated microbiomes using the consumer/resource model

      Presenting Author: Purushottam Dixit, PhD (he/him/his) – Yale University

    • 2:45 PM - 3:45 PM EST
      Developing a biophysical hybrid model for simulating mesenchymal and amoeboid modes of migration in T-cells

      Presenting Author: Ali Mohammad (he/him/his) – University of Minnesota

    • 2:45 PM - 3:45 PM EST
      Exploring the Interplay of Hepcidin in Hemochromatosis: An Integrated Approach with AlphaFold2 and Molecular Dynamics Simulation

      Presenting Author: Zareeyab Abdulkhalique Malik, MBBS, PGCIH, MS (BME) (she/her/hers) – University of Bridgeport

      Co-Author: Peiqiao Wu, PhD (he/him/his) – University of Bridgeport

      Co-Author: Prabir Patra, PhD – Marshall University

      Co-Author: Tribhuwan Tiwari – University of Bridgeport

    • 2:45 PM - 3:45 PM EST
      Effects of Lymphocytes Trafficking Inhibition on Antiretroviral Drug Distribution within Lymph Nodes

      Presenting Author: Sobia Anam (she/her/hers) – University of Delaware

      Primary Investigator: Ryan Zurakowski, PhD (he/him/his) – University of Delaware

      Co-Author: Michael J. Donzanti, PhD (he/him/his) – University of Delaware

      Co-Author: Michael J. Piovoso, PhD (he/him/his) – University of Delaware

      Co-Author: Jason Gleghorn, PhD (he/him/his) – University of Delaware