Bioinformatics, Computational and Systems Biology - Poster Session C

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Presentations:

• 10:00 AM - 11:00 AM EST

  Exploring the use of large language model embeddings for stroke medication recommendations
  

  Presenting Author: Janae E. Hahn (she/her/hers) – University of South Dakota

  Co-Author: Dane J. Reeves (he/him/his) – University of South Dakota

  Co-Author: Bichar Dip Shrestha Gurung (he/him/his) – University of South Dakota

  Co-Author: Etienne Gnimpieba – University of South Dakota

  Co-Author: Alain Bomgni – University of South Dakota
• 10:00 AM - 11:00 AM EST

  Generative Machine Learning for Single-Cell Clustering Identifies Determinants of CAR T Cell Longevity
  

  Presenting Author: Leo Shen – Yale University

  Co-Author: Zhiliang Bai, PhD (he/him/his) – Yale University

  Primary Investigator: Rong Fan – Yale University
• 10:00 AM - 11:00 AM EST

  Use of Data Integration and Machine Learning to Identify Cancer Biomarkers, Aiding in Diagnosis and Treatment
  

  Presenting Author: Grace D. Goeden – University of South Dakota

  Primary Investigator: Etienne Gnimpieba – University of South Dakota

  Co-Author: Bichar Dip Shrestha Gurung

  Co-Author: Tim W. Hartman, MS – University of South Dakota
• 10:00 AM - 11:00 AM EST

  Identifying Phenotypic Differences and Risk Factors in Cardiac Sarcoidosis Patients Using Unsupervised Machine Learning
  

  Presenting Author: Thoya Raman – Johns Hopkins University

  Co-Author: Anjali Wagle – Johns Hopkins University School of Medicine

  Co-Author: Ishan Vatsaraj, MS – Johns Hopkins University

  Co-Author: Shane Loeffler, PhD – Johns Hopkins University

  Last Author: Nisha Gilotra – Johns Hopkins University School of Medicine

  Primary Investigator: Natalia Trayanova, PhD (she/her/hers) – Johns Hopkins University
• 10:00 AM - 11:00 AM EST

  Impact of Transcorneal Electrical Stimulation on Retinal Gene Expression
  

  Presenting Author: Jefferson Veillard (he/him/his) – USC Keck School of Medicine Translation Genomics Department

  Primary Investigator: Bodour Salhia
• 10:00 AM - 11:00 AM EST

  Incorporation of receptor recycling and asymmetric endosome distribution to improve performance of moving boundary model of epidermal growth factor receptor trafficking and signaling
  

  Presenting Author: Seth Boehringer (he/him/his) – University of Virginia

  Co-Author: Sung Hyun Lee – University of Virginia

  Primary Investigator: Matthew J. Lazzara – University of Virginia
• 10:00 AM - 11:00 AM EST

  Inflammasomes and Kinetic Modeling of DNA Sensor Protein Polymerization
  

  Presenting Author: Jeremiah Tobin (he/him/his) – University of South Carolina

  Primary Investigator: Mark Uline – University of South Carolina

  Co-Author: Clinton Webb, PhD – University of South Carolina
• 10:00 AM - 11:00 AM EST

  Interpretable deep learning reveals differences in brain aging according to genetic risk of Alzheimer's Disease
  

  Presenting Author: Jaron Kawamura – University of Southern California

  Co-Author: Nikhil N. Chaudhari, MS – USC

  Co-Author: Nahian F. Chowdhury – USC

  Co-Author: Phoebe E. Imms, PhD – USC

  Primary Investigator: Andrei Irimia, PhD – USC
• 10:00 AM - 11:00 AM EST

  Joint Sequence and Structure Embeddings of Spike Proteins for Predicting Viral Dynamics
  

  Presenting Author: Lila Schweinfurth – Yale University

  Co-Author: Joao Felipe Rocha (he/him/his) – Yale University

  Presenting Author: Dhananjay Bhaskar, PhD (he/him/his) – Yale University

  Last Author: Akiko Iwasaki, PhD (she/her/hers) – Yale University

  Primary Investigator: Smita Krishnaswamy (she/her/hers) – Yale University
• 10:00 AM - 11:00 AM EST

  Long-term exercise training stabilizes chronic adipose tissue inflammation in men and women
  

  Presenting Author: Allister Quizon – University of San Diego

  Co-Author: Eric Emanuelsson – Karolinska Institute

  Co-Author: Stefan Reitzner, Ph.D – Karolinska Institute

  Co-Author: Malene E. Lindholm, PhD (she/her/hers) – Stanford University

  Primary Investigator: Carl Johan Sundberg, MD, PhD (he/him/his) – Karolinska Institute

  Last Author: Mark Chapman, PhD (he/him/his) – University of San Diego
• 10:00 AM - 11:00 AM EST

  Halo Replay Burst: Enabling Low-Cost Data Analysis of Large-Scale Cellular Simulations
  

  Primary Investigator: Amanda Randles, PhD (she/her/hers) – Duke University

  Presenting Author: Ayman Yousef (he/him/his) – Duke University
• 10:00 AM - 11:00 AM EST

  Identifying metabolic heterogeneity of breast cancer cells for the evaluation of competitive growth
  

  Presenting Author: Audrey Freischel, MS – The University of Texas at Austin

  Primary Investigator: Amy Brock – The University of Texas at Austin
• 10:00 AM - 11:00 AM EST

  Imaging-Informed Computational Model of Murine Cerebral Hemodynamics
  

  Presenting Author: Rebeca Oliveira, M.S. – Johns Hopkins University

  Co-Author: Janaka Senarathna, PhD – Johns Hopkins University School of Medicine

  Co-Author: Vu Dinh (he/him/his) – Johns Hopkins University

  Co-Author: Aleksander Popel – Johns Hopkins University

  Primary Investigator: Arvind P. Pathak, PhD (he/him/his) – Johns Hopkins University
• 10:00 AM - 11:00 AM EST

  Inappropriate Data Handling Leads to Overoptimistic Machine Learning Results: Small-For-Gestational-Age (SGA) Prediction
  

  Presenting Author: Shier Nee Saw – Universiti Malaya

  Co-Author: Ziwei Liu – Universiti Malaya

  Co-Author: Yi Fong Chong – Universiti Malaya

  Co-Author: Neha Sethi A/P Naresh Sethi MD (O&G), MRCOG

  Co-Author: Rahmah Binti Saaid

  Co-Author: Sofiah Sulaiman – University of Malaya

  Co-Author: Azanna Binti Ahmad Kamar, MBBS, MRCPCH, Cert Ped Bioethics (she/her/hers) – Universiti Malaya

  Co-Author: Chu Kiong Loo – Universiti Malaya
• 10:00 AM - 11:00 AM EST

  Incorporating bounded data for classification of molecular potency improvements
  

  Presenting Author: Zachary Fralish, BS – Duke University

  Co-Author: Paul Skaluba – Duke University

  Primary Investigator: Daniel Reker, DrSc – Duke University
• 10:00 AM - 11:00 AM EST

  Individualized Muscle Sympathetic Nerve Activity Denoising Using Valsalva Maneuver Response
  

  Presenting Author: Surat Kulapatana, MD (he/him/his) – Vanderbilt University

  Co-Author: Stefano Rigo, MD (he/him/his) – Humanitas University

  Co-Author: Vasille Urechie – Vanderbilt University Medical Center

  Co-Author: Robert Brychta, PhD – National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health

  Co-Author: Italo Biaggioni – Vanderbilt University Medical Center

  Primary Investigator: Andre' Diedrich, MD, PhD (he/him/his) – Vanderbilt University
• 10:00 AM - 11:00 AM EST

  Integrating CRISPR and Machine Learning to Achieve Mature Chondrocyte Genetic Profiles in MSCs
  

  Presenting Author: Joshua Graham – Lehigh University Bioengineering

  Co-Author: Lifang He – Lehigh University Computer Science & Engineering

  Last Author: Tomas Gonzalez-Fernandez, PhD – Lehigh University Bioengineering
• 10:00 AM - 11:00 AM EST

  Integrating Pathway Optimization and Omics Analyses to Unveil Mechanisms on Pulmonary Arterial Hypertension
  

  Presenting Author: Youzi Bi (she/her/hers) – UCLA

  Primary Investigator: Jennifer L. Wilson, PhD (she/her/hers) – University of California Los Angeles
• 10:00 AM - 11:00 AM EST

  Investigation of Estrogen Receptor Binding Control in Breast and Endometrial Cancer
  

  Presenting Author: Alexandra Richey, MS (she/her/hers) – University of Utah

  Primary Investigator: Jason Gertz, PhD – University of UT
• 10:00 AM - 11:00 AM EST

  Large-scale proteomics analysis of Alzheimer’s Disease plasma blood reveals sex and APOE specific signatures
  

  Presenting Author: Simona Merlini, MS (she/her/hers) – Center for Innovation in Brain Science

  Last Author: Francesca Vitali – Center for Innovation in Brain Science

  Primary Investigator: Roberta Diaz Brinton – Center for Innovation in Brain Science
• 10:00 AM - 11:00 AM EST

  Leveraging host gene-response signatures to identify microbiome metabolizers of drugs: A case study of Tenofovir metabolism by the vaginal microbiome.
  

  Presenting Author: Dali Nemecio, B.A in Biochemsitry (she/her/hers) – Case Western Reserve University

  Primary Investigator: Douglas Brubaker, PhD (he/him/his) – Case Western Reserve University
• 10:00 AM - 11:00 AM EST

  Leveraging non-standard radiomics for outcome prediction in brain metastases treated with Personalized Ultra-fractionated Stereotactic Adaptive Radiotherapy (PULSAR)
  

  Presenting Author: Haozhao Zhang, M.S. (he/him/his) – University of Texas Southwestern Medical Center

  Primary Investigator: Hao Peng (he/him/his) – UTSW radiation oncology
• 10:00 AM - 11:00 AM EST

  Machine Learning and Electronic Health Records Predict tDCS Treatment Outcomes of Anxiety in Older Adults
  

  Presenting Author: Daniel Rodriguez – University of Florida

  Co-Author: Skylar E. Stolte, MEng – University of Florida

  Co-Author: Adam Woods – University of Florida

  Last Author: Ruogu Fang, PhD (she/her/hers) – University of Florida
• 10:00 AM - 11:00 AM EST

  Machine Learning Guided Combination Nanoparticle Design.
  

  Presenting Author: Lauren A. Onweller (she/her/hers) – Duke University

  Primary Investigator: Daniel Reker, DrSc – Duke University

  Co-Author: Joe Laforet (he/him/his) – Duke University

  Co-Author: Yan Xiang, PhD (he/him/his) – Duke University
• 10:00 AM - 11:00 AM EST

  Machine Learning Reveals Hidden Simplicity in Microbial Community Dynamics
  

  Presenting Author: Zhengqing Zhou – Duke University

  Co-Author: Emrah Simsek, PhD (he/him/his) – Duke University

  Co-Author: Grayson Hamrick – Duke University

  Co-Author: Zachary Holmes, MS – Duke University

  Co-Author: David Karig – Clemson University

  Primary Investigator: Lingchong You – Duke University
• 10:00 AM - 11:00 AM EST

  Mathematical Modeling of Immune Response to SARS-CoV-2
  

  Presenting Author: Ayesh Awad (he/him/his) – Elon University

  Primary Investigator: Hwayeon Ryu – Elon University
• 10:00 AM - 11:00 AM EST

  Mathematical Modeling of the T cell Response to Vaccination
  

  Co-Author: Seyedeh Fatemeh Seyyedizadeh, PhD Candidate (she/her/hers) – McMaster University

  Co-Author: Ross Kedl – University of Colorado

  Co-Author: Christopher Hunter – University of Pennsylvania

  Presenting Author: David A. Christian, PhD (he/him/his) – University of Pennsylvania

  Last Author: Thomas A. Adams, II (he/him/his) – Norwegian University of Science and Technology
• 10:00 AM - 11:00 AM EST

  Modeling Synergistic Effects of Integrin and TGF-β Signaling in Epithelial Mesenchymal Transition
  

  Presenting Author: Prerak Thakkar (he/him/his) – Virginia Commonwealth University

  Primary Investigator: Christopher Lemmon (he/him/his) – Virginia Commonwealth University
• 10:00 AM - 11:00 AM EST

  Motion tracking and machine learning approach for segmentation of a 3D printed Ice structures in real time
  

  Presenting Author: Andres A. Garcia, Mr (he/him/his) – Carnegie Mellon University

  Co-Author: Akash Garg, PhD – Carnegie Mellon University

  Co-Author: Feimo Yang, MS – Carnegie Mellon University

  Last Author: Burak Ozdonganlar – Carnegie Mellon University

  Primary Investigator: Philip R. R. LeDuc, PhD – Carnegie Mellon University
• 10:00 AM - 11:00 AM EST

  Assessing ChatGPT as a tool in Agent-Based Modeling
  

  Presenting Author: Dorothy N. Beck (she/her/hers) – University of Virginia

  Co-Author: Tien Comlekoglu – University of Virginia

  Primary Investigator: Shayn M. Peirce, PhD (she/her/hers) – University of Virginia