Bioinformatics, Computational and Systems Biology - Poster Session D

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Presentations:

• 3:30 PM - 4:30 PM EST

  Machine Learning Frameworks for Characterizing Phenotypic Variations in Autism Spectrum Disorder with Lifetime Medical Records
  

  Presenting Author: Yunzhe Chen (he/him/his) – Wake Forest University School of Medicine

  Co-Author: Arezoo Movaghar, PhD – Wake Forest University School of Medicine
• 3:30 PM - 4:30 PM EST

  Machine Learning Supported Identification of Hydrophobic Drugs to Use in Long-Acting Injectable Formulations
  

  Presenting Author: Kent Qi (he/him/his) – Brigham and Women's Hospital, Harvard Medical School

  Co-Author: Flavia Codreanu – Brigham and Women's Hospital, Harvard Medical School

  Co-Author: Benjamin Clark – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology

  Co-Author: Colin Cotter – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology

  Co-Author: Susan R. Ling – Brigham and Women's Hospital, Harvard Medical School

  Co-Author: Jia Liang – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology

  Co-Author: Parmiss Khosravi – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology

  Co-Author: Aaron Lopes – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology

  Co-Author: Yogesh Deshpande, MS Mechanical Engineering (he/him/his) – Brigham and Women's Hospital, Harvard Medical School

  Co-Author: Nabil Shalabi, PhD – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology

  Last Author: Jason Li (he/him/his) – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology

  Primary Investigator: Giovanni Traverso – Brigham and Women's Hospital, Harvard Medical School, Massachusetts Institute of Technology
• 3:30 PM - 4:30 PM EST

  Mapping the Spatial Transcriptome of Clustered Protocadherins in Early Mouse Brain Development
  

  Co-Author: Chase Holdener – Cornell University

  Co-Author: Shaowen Jiang – Cornell University

  Primary Investigator: Iwijn Vlaminck, PhD – Cornell University

  Presenting Author: Soleil Su – Cornell University
• 3:30 PM - 4:30 PM EST

  MICAL2 expression promotes invasion and metastasis by cell autonomous and non-cell autonomous mechanisms in Pancreatic Cells
  

  Presenting Author: Katherine Simms – San Diego State University Research Foundation

  Co-Author: Esra Tiftik Karabay, MS (she/her/hers) – UCSD & SDSU

  Co-Author: Alexei Martsinkovskiy (he/him/his) – University of San Diego California

  Co-Author: Bharti Garg – University of San Diego California

  Co-Author: Deepa Sheikh Babu – University of San Diego California

  Co-Author: Andrew Lowy – University of San Diego California

  Primary Investigator: Parag Katira, PhD (he/him/his) – San Diego State University
• 3:30 PM - 4:30 PM EST

  Microbiome-modulated behavioral changes in D. melanogaster
  

  Presenting Author: Justine Corsilia (she/her/hers) – Princeton University

  Co-Author: Grace C. McKenzie-Smith, PhD (she/her/hers) – Wesleyan University

  Last Author: Joshua Shaevtiz, PhD – Princeton University
• 3:30 PM - 4:30 PM EST

  Model and parameter identifiability in predictive image-based models of high-grade glioma
  

  Presenting Author: Khushi C. Hiremath – The University of Texas at Austin

  Co-Author: Kenan Atakishi – The University of Texas at Austin

  Co-Author: Ernesto A B F Lima, PhD (he/him/his) – The University of Texas at Austin

  Co-Author: Maguy Farhat – MD Anderson Cancer Center

  Co-Author: Bikash Panthi – MD Anderson Cancer Center

  Co-Author: Holly Langshaw – MD Anderson Cancer Center

  Co-Author: Mihir Shanker, FRANZCR – Princess Alexandra Hospital

  Co-Author: Wasif Talpur, MD – MD Anderson Cancer Center

  Co-Author: Sara Thrower, PhD, DABR (she/her/hers) – MD Anderson Cancer Center

  Co-Author: Jodi Goldman – MD Anderson Cancer Center

  Co-Author: Caroline Chung – MD Anderson Cancer Center

  Co-Author: Thomas Yankeelov, PhD – The University of Texas at Austin

  Last Author: David A. Hormuth, II, PhD (he/him/his) – The University of Texas At Austin
• 3:30 PM - 4:30 PM EST

  Optimizing Laccase Enzyme for Polyethylene Degradation Using Molecular Dynamics Analysis
  

  Presenting Author: Dhruti Shah – OSU

  Co-Author: Amer Z. Abdelbaki – OSU

  Co-Author: Chethana Yerramsetty – OSU

  Co-Author: Jinju Kim – OSU

  Co-Author: Jasritha Guddanti – OSU

  Co-Author: Parker Haskett – OSU

  Co-Author: Josef Cios – OSU

  Co-Author: Ellie Schroer – OSU

  Co-Author: Michael Karpov – OSU

  Co-Author: Saketha Ram Belide, BS (he/him/his) – OSU

  Co-Author: Olivia Sullivan – OSU

  Co-Author: Emma Masters – OSU

  Co-Author: Anna Bontempo – OSU

  Co-Author: Khoa Cao – OSU
• 3:30 PM - 4:30 PM EST

  Optimizing Toehold Switches for the Detection of Cervical Precancer microRNAs
  

  Co-Author: Renee A. Jaranson – Optical Therapeutics & Nanotechnology Laboratory, University of Maryland, College Park

  Co-Author: Navya Bansal (they/them/theirs) – University of Maryland International Genetically Engineered Machine

  Co-Author: Mia Jocic (she/her/hers) – University of Maryland International Genetically Engineered Machine

  Co-Author: Jonathon Meyer, N/A (They/He) – University of Maryland International Genetically Engineered Machine

  Co-Author: Lauren Applegate – University of Maryland International Genetically Engineered Machine

  Co-Author: Jonathan Wu – University of Maryland International Genetically Engineered Machine

  Co-Author: Abhiraman Senthilkumar (he/him/his) – University of Maryland International Genetically Engineered Machine

  Co-Author: Aditri Gadigi (she/her/hers) – University of Maryland International Genetically Engineered Machine

  Presenting Author: Kevin Zhang (he/him/his) – University of Maryland International Genetically Engineered Machine

  Co-Author: Krista Adu-Osei (she/her/hers) – University of Maryland International Genetically Engineered Machine

  Co-Author: Rebecca Lu (she/her/hers) – University of Maryland International Genetically Engineered Machine

  Co-Author: Graham M. Ferguson (he/him/his) – University of Maryland International Genetically Engineered Machine

  Co-Author: Haider Hussain – University of Maryland International Genetically Engineered Machine

  Co-Author: Hannah LaPadula – University of Maryland International Genetically Engineered Machine

  Co-Author: Sarah Firdaus (she/her/hers) – University of Maryland International Genetically Engineered Machine
• 3:30 PM - 4:30 PM EST

  Predicting the response of undifferentiated pleomorphic sarcoma to neoadjuvant therapy with image-based modeling
  

  Presenting Author: Kenan Atakishi – The University of Texas at Austin

  Co-Author: Elvis Duran Sierra, PhD (he/him/his) – MD Anderson Cancer Center

  Co-Author: Thomas Yankeelov, PhD – The University of Texas at Austin

  Co-Author: Behrang Amini, MD, PhD – MD Anderson Cancer Center

  Co-Author: Raul F. Valenzuela Perez, MD – MD Anderson

  Co-Author: Mathew Antony, MD – MD Anderson Cancer Center

  Last Author: David A. Hormuth, II, PhD (he/him/his) – The University of Texas At Austin
• 3:30 PM - 4:30 PM EST

  Revolutionizing Cancer Spheroid Viability Analysis with Deep Learning
  

  Presenting Author: Rajiv Anne (he/him/his) – University of Pittsburgh

  Primary Investigator: Yu-Chih Chen, PhD – UPMC Hillman Cancer Center/University of Pittsburgh
• 3:30 PM - 4:30 PM EST

  Multimodal Data Model for Early Diagnosis and Management of Non-Alcoholic Fatty Liver Disease (NAFLD)
  

  Presenting Author: Alejandro Miron Jabalera, MS – UCLA

  Primary Investigator: Tzung Hsiai, MD, PhD (he/him/his) – Department of Medicine (Cardiology) and Bioengineering, UCLA

  Co-Author: Samuel Margolis – UCLA

  Co-Author: Kyla Gelev
• 3:30 PM - 4:30 PM EST

  One-Size-Fits-All Prediction Model for Small-for-Gestational Age (SGA) Babies: Unraveling Demographic Disparities and Model Generalization Challenges.
  

  Presenting Author: Jia Yu Lim (he/him/his) – Universiti Malaya

  Co-Author: Shier Nee Saw – Universiti Malaya

  Co-Author: Neha Sethi, MD (O&G), MRCOG – Universiti Malaya

  Co-Author: Rahmah Saaid – Universiti Malaya

  Co-Author: Azanna Ahmad Kamar – Universiti Malaya

  Co-Author: Sofiah Sulaiman – Universiti Malaya

  Co-Author: Praveen Kumar Nirmalan, MPH – AMMA CENTER for Diagnosis and Preventive Medicine Pvt Ltd Kochi Kerala

  Co-Author: Rijo Mathew Choorakuttil – Amma Scans- Centre for Diagnosis & Preventive Medicine Pvt.Ltd.,Kochi, Kerala

  Co-Author: Kwan Hoong Ng – Universiti Malaya
• 3:30 PM - 4:30 PM EST

  OPTIMIZATION OF THERAPEUTIC T CELLS THROUGH BIOPHYSICAL MODELING
  

  Presenting Author: Roberto Alonso Matilla, PhD (he/him/his) – University of Minnesota

  Co-Author: Paolo P. Provenzano, PhD (he/him/his) – University of Minnesota

  Last Author: David J. Odde – University of Minnesota
• 3:30 PM - 4:30 PM EST

  Paired Molecular Machine Learning for Drug Metabolism and Prodrug Activation
  

  Presenting Author: Chloe Markey (she/her/hers) – Duke University

  Co-Author: Zachary Fralish, BS – Duke University

  Co-Author: Hannah Lee – Duke University

  Primary Investigator: Daniel Reker, DrSc – Duke University
• 3:30 PM - 4:30 PM EST

  Pathways Analysis of Predicted Diabetes Drugs Reveals Divergent Connections to Approved Diabetes Drug Pathways
  

  Presenting Author: Anjali Sivanandan (she/her/hers) – University of California, Los Angeles

  Primary Investigator: Jennifer L. Wilson, PhD (she/her/hers) – University of California Los Angeles
• 3:30 PM - 4:30 PM EST

  Predicting Cerebral Blood Flow using a Multiscale Modeling Approach
  

  Presenting Author: Dabasish Kumar Saha, PhD student (he/him/his) – Florida International University

  Primary Investigator: Nikolaos M. Tsoukias, PhD – Florida International University
• 3:30 PM - 4:30 PM EST

  pyQCM-BraTaDio: A tool for visualization, data mining, and modeling of Quartz crystal microbalance with dissipation data
  

  Presenting Author: Brandon Pardi, Master of Science Candidate (he/him/his) – University of California Merced

  Co-Author: Tajin Syeda Ahmed, PhD (she/her/hers) – University of California Merced

  Co-Author: Silvia Jonguitud Flores, MD (she/her/hers) – Universidad Autonoma de San Luis Potosi

  Co-Author: Jean-Michel Friedt – FEMTO-ST

  Co-Author: Warren Flores (they/them/theirs) – University of California Merced

  Co-Author: Laura Mears – Technische Universitaet Wien

  Co-Author: Bernardo Yannez Soto – Universidad Autonoma de San Luis Potosi

  Primary Investigator: Roberto Andresen Eguiluz, PhD (he/him/his) – University of California Merced
• 3:30 PM - 4:30 PM EST

  Quest2Dx: Questionnaire Transformers for Parkinson’s Disease Screening
  

  Presenting Author: Diego Machado Reyes – Rensselaer Polytechnic Institute

  Last Author: Pingkun Yan, PhD – Rensselaer Polytechnic Institute

  Co-Author: Li Shen – Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania

  Co-Author: Juergen Hahn, PhD – Rensselaer Polytechnic Institute
• 3:30 PM - 4:30 PM EST

  Rapid Classification of Vascular Aging from Continuous Photoplethysmography Monitoring of Trauma Patients
  

  Presenting Author: Ryan B. Felix, Bachelor of Science (he/him/his) – Department of Bioengineering, University of Maryland College Park

  Co-Author: Shiming Yang – Department of Anesthesiology, University of Maryland School of Medicine

  Co-Author: Jamie Podell – Department of Neurology, University of Maryland School of Medicine

  Co-Author: Chien Yu Lin, PhDc – Department of Anesthesiology, University of Maryland School of Medicine

  Co-Author: Chia Chen Liang, PhDc (she/her/hers) – Department of Anesthesiology, University of Maryland School of Medicine

  Co-Author: William Gu – Department of Anesthesiology, University of Maryland School of Medicine

  Co-Author: John P. Fisher, PhD (he/him/his) – University of Maryland, College Park

  Co-Author: Neeraj Badjatia, MD, MSc, MHCDS – Department of Neurology, University of Maryland School of Medicine

  Primary Investigator: Peter Hu – Department of Anesthesiology, University of Maryland School of Medicine
• 3:30 PM - 4:30 PM EST

  Revealing Genetic Variants Linked to Drug Resistance Using the Group Association Model
  

  Presenting Author: Julian Saliba – Tulane University
• 3:30 PM - 4:30 PM EST

  Single-Cell RNA Sequencing Data Informs Research on Sickle Cell Disease Arteriopathy
  

  Presenting Author: Julia N. Frank (she/her/hers) – National Institutes of Health / NIBIB

  Co-Author: Jacob D. Davis, PhD – NIH

  Co-Author: Liana Hatoum, M.S. – Georgia Institute of Technology

  Co-Author: Ed Botchwey – Georgia Institute of Technology

  Co-Author: Hannah Song Lee, PhD (she/her/hers) – National Institutes of Health / NIBIB

  Primary Investigator: Manu O. Platt, PhD (he/him/his) – National Institutes of Health / NIBIB
• 3:30 PM - 4:30 PM EST

  Solving the “Blind men and the elephant problem”: Additive statistical learning of complex high dimensional models from partial faceted datasets
  

  Presenting Author: Yufei Wu – Johns Hopkins University

  Primary Investigator: Sean Sun – Johns Hopkins University
• 3:30 PM - 4:30 PM EST

  Spectral Changes due to rTMS in Major Depressive Disorder
  

  Presenting Author: Isuru Pabasara Rajapakshe (she/her/hers) – California State University Los Angeles

  Co-Author: Luiz Jimenez Dias – California State University Los Angeles

  Co-Author: Tasha Bierling – BrainStim Centers

  Co-Author: Jakob Liker – SUNY Downstate College of Medicine Brooklyn

  Co-Author: Mark A. Liker, MD – USC Keck School of Medicine

  Last Author: Deborah S. Won – California State University Los Angeles
• 3:30 PM - 4:30 PM EST

  Stochastic Modeling of IP3R-Mediated Calcium Signaling in Brain Capillary Endothelial Cells
  

  Presenting Author: Niloufar Khakpour, PhD (she/her/hers) – Florida International University

  Co-Author: Nikolaos M. Tsoukias, PhD – Florida International University
• 3:30 PM - 4:30 PM EST

  To Investigate Machine Learning Models Performance of Predicting Small-for-Gestational-Age in Malaysia and Singapore Datasets
  

  Primary Investigator: Jiaxuan Deng, graduate (she/her/hers) – Universiti Malaya

  Co-Author: Neha Sethi A/P Naresh Sethi, MD (O&G), MRCOG (she/her/hers) – Universiti Malaya

  Co-Author: Azanna Binti Ahmad Kamar, MBBS, MRCPCH, Cert Ped Bioethics (she/her/hers) – Universiti Malaya

  Co-Author: Rahmah Binti Saaid – Universiti Malaya

  Co-Author: Chu Kiong Loo – Universiti Malaya

  Co-Author: Citra Nurfarah Zaini Mattar – National University of Singapore/National University Hospital

  Co-Author: Nurul Syazwani Jalil, DIPLOMA – Universiti Malaya

  Presenting Author: Shier Nee Saw – Universiti Malaya
• 3:30 PM - 4:30 PM EST

  TRACER—Transformers with Multi-head Attention and Coarse-grain Analysis for TCR-pMHC Recognition
  

  Last Author: Jason George, MD, PhD – Texas A&M University

  Presenting Author: Zahra S. Ghoreyshi, PhD – Texas A&M University

  Co-Author: Hamid Teimouri, PhD – Rice University

  Co-Author: Anatoly Kolomeisky, PhD – Rice University
• 3:30 PM - 4:30 PM EST

  Using A Computational Model to Investigate Fcγ Receptor Competition and the Effect of Fcγ Receptor Polymorphisms and Different Tissues
  

  Presenting Author: Kade E. Wong, MSE (he/him/his) – University of Michigan, Ann Arbor

  Co-Author: Suzanne Shoffner-Beck – University of Michigan, Ann Arbor

  Co-Author: Amy W. Chung – University of Melbourne

  Primary Investigator: Kelly B. Arnold – University of Michigan, Ann Arbor

  Last Author: Kelly B. Arnold – University of Michigan, Ann Arbor
• 3:30 PM - 4:30 PM EST

  What is a “Good” Figure: Scoring of Biomedical Data Visualization
  

  Presenting Author: Hector Torres – Georgia Institute of Technology

  Co-Author: Neel D. Sarkar, BS – Georgia Institute of Technology

  Co-Author: Nicholas Zhang – Georgia Institute of Technology

  Co-Author: Zhou Fang – Georgia Institute of Technology

  Co-Author: Shuangyi Cai – Georgia Institute of Technology

  Primary Investigator: Ahmet F. Coskun – Georgia Institute of Technology
• 3:30 PM - 4:30 PM EST

  Alzheimer’s Disease-Associated Variants Impair TREM2 Multimerization
  

  Presenting Author: Rory Greer (he/him/his) – University of Alabama at Birmingham

  Co-Author: Hunter B. Dean, PhD (he/him/his) – University of Alabama at Birmingham

  Co-Author: Shan-Zhong Yang – University of Alabama at Birmingham

  Co-Author: Daniel Elston – University of Alabama at Birmingham

  Co-Author: Thomas Brett – Washington University School of Medicine in St. Louis

  Co-Author: Erik Roberson – University of Alabama at Birmingham

  Last Author: Yuhua Song, PhD (she/her/hers) – University of Alabama at Birmingham