Bioinformatics, Computational and Systems Biology - Poster Session E

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Presentations:

• 10:00 AM - 11:00 AM EST

  SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis
  

  Presenting Author: Mayling Chen – Johns Hopkins University

  Co-Author: Gohta Aihara (he/him/his) – California Institute of Technology

  Co-Author: Kalen Clifton (she/her/hers) – Johns Hopkins University

  Co-Author: Zhuoyan Li – The New York Genome Center

  Co-Author: Lyla Atta – Johns Hopkins University

  Co-Author: Brendan Miller, PhD – Merck

  Co-Author: Rahul Satija – The New York Genome Center

  Co-Author: John Hickey, PhD – Duke University

  Primary Investigator: Jean Fan, PhD – Johns Hopkins University
• 10:00 AM - 11:00 AM EST

  State Transition Model of Resistance to Costimulatory Blockade Tolerance Induction in Organ Transplantation Using a Minimally-Invasive Implant
  

  Presenting Author: Russell R. Urie, PhD (he/him/his) – University of Michigan

  Co-Author: Amogh Angadi – University of Michigan

  Co-Author: Jiane Feng – University of Michigan

  Co-Author: Daniel Goldstein – University of Michigan

  Primary Investigator: Lonnie D. Shea, PhD – University of Michigan
• 10:00 AM - 11:00 AM EST

  System-wide analysis of double gene knockouts in colorectal cancer
  

  Presenting Author: Selam Mehreteab – University of Southern California

  Co-Author: Niki Tavakoli, MS (she/her/hers) – University of Southern California

  Primary Investigator: Stacey Finley – Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA; Alfred E. Mann Department of Biomedical Engineering, University of Southern California, Los Angeles, CA
• 10:00 AM - 11:00 AM EST

  Targeting peptoids based antimicrobials for treating ear infections
  

  Presenting Author: Wafiq Khondkar (he/him/his) – Syracuse University

  Co-Author: Anand Wadurkar – Syracuse University

  Primary Investigator: Shikha Nangia, PhD (she/her/hers) – Syracuse Univeristy
• 10:00 AM - 11:00 AM EST

  The Interplay of EGF Stimulation and Metabolism on Vacuolization in EGFR-Overexpressing Glioblastoma Cells
  

  Presenting Author: Riko Mukoyama – Smith College

  Co-Author: Adrian Shimpi, PhD (he/him/his) – University of Virginia

  Co-Author: Sam Crowl (he/him/his) – University of Virginia

  Co-Author: Logan Campbell – University of Virginia

  Co-Author: Sarah Buchanan, ME – University of Virginia

  Co-Author: Matthew J. Lazzara – University of Virginia

  Last Author: Kristen Naegle, PhD (she/her/hers) – University of Virginia
• 10:00 AM - 11:00 AM EST

  Understanding Heterogeneity within High-Grade Serous Adenocarcinoma
  

  Presenting Author: Tyler Johnston (he/him/his) – University of Pittsburgh Medical Center

  Primary Investigator: Wayne Stallaert
• 10:00 AM - 11:00 AM EST

  Utilizing autoencoders for dimensionality reduction of cell images for time series optimal transport analysis
  

  Presenting Author: Elizabeth Rosen – Boston University

  Primary Investigator: Brian Cleary

  Co-Author: John P. Bryan
• 10:00 AM - 11:00 AM EST

  Validating in silico evolutionary predictions for various pharmacokinetic profiles and treatment adherences using an automated continuous-culture bioreactor
  

  Presenting Author: Anna Stacy (she/her/hers) – Department of Physics, Case Western Reserve University

  Co-Author: John Joyce (he/him/his) – Hawken Highschool

  Last Author: Rowan Barker-Clarke, PhD (he/him/his) – Cleveland Clinic Lerner Research Institute

  Primary Investigator: Jacob Scott – Cleveland Clinic Lerner Research Institute
• 10:00 AM - 11:00 AM EST

  WoundWare: A Generalized in vitro Wound Segmentation Tool
  

  Presenting Author: Malak Al-Noubani (she/her/hers) – University of Texas at Arlington

  Co-Author: Anne Alsup, BSc (she/her/hers) – University of Texas at Arlington

  Co-Author: Mia Grubbs (she/her/hers) – University of Texas at Arlington

  Last Author: Michael Cho – University of Texas at Arlington
• 10:00 AM - 11:00 AM EST

  Capturing visual search strategy through a novel application of time series clustering to raw eye-tracking data
  

  Presenting Author: Thomas Seacrist, Master of Biomedical Engineering (he/him/his) – University of Pennsylvania

  Co-Author: Elizabeth Walshe, PhD (they/them/theirs) – Children's Hospital of Philadelphia

  Co-Author: David Grethlein, MSc – Drexel University

  Co-Author: Megan Ryerson, PhD (she/her/hers) – Unversity of Pennsylvania

  Last Author: Flaura Winston, MD, PhD (she/her/hers) – University of Pennsylvania/ Children's Hospital of Philadelphia
• 10:00 AM - 11:00 AM EST

  Deep Learning for 3D Protein Structure Prediction from AFM Images
  

  Presenting Author: Jaydeep Rade, PhD (he/him/his) – Iowa State University

  Co-Author: Ethan Herron – Iowa State University

  Co-Author: Soumik Sarkar – Iowa State University

  Co-Author: Anwesha Sarkar – Iowa State University

  Last Author: Adarsh Krishnamurthy – Iowa State University
• 10:00 AM - 11:00 AM EST

  Development of an automated machine learning-driven assay for robust and accessible analysis of cell migration
  

  Presenting Author: Kathleen Trang, BS (she/her/hers) – University of Maryland

  Co-Author: Adriana Del Pino Herrera, BS – University of Florida

  Primary Investigator: Meghan C. Ferrall-Fairbanks, PhD (she/her/hers) – University of Florida
• 10:00 AM - 11:00 AM EST

  Engineering plastic degrading Enzymes using machine learning - Yanapat Janthana
  

  Presenting Author: Yanapat Janthana – University of Oregon
• 10:00 AM - 11:00 AM EST

  Epoch+: dynamic regulatory network reconstruction and distal cis-regulatory element prediction from single-nucleus multi-omics data
  

  Presenting Author: Yanyan Mo (she/her/hers) – Johns Hopkins University, Biomedical Engineering
• 10:00 AM - 11:00 AM EST

  Evaluating Inter-Beat Intervals for Sleep Staging: A Comparative Study with Electrocardiogram Data
  

  Presenting Author: Bill Chen – Duke University

  Co-Author: Ke Wang – Duke University

  Primary Investigator: Jessilyn Dunn, PhD – Duke University

  Co-Author: Ali R. Roghanizad, PhD, MBA – Duke University

  Co-Author: Jiamu Yang – Duke University

  Co-Author: Md Mobashir Hasan Shandhi (he/him/his) – Duke University
• 10:00 AM - 11:00 AM EST

  Individual health factors inform the link between gut microbiome and cardiovascular health: Insights from a cross-sectional analysis of resting heart rate
  

  Presenting Author: Anita Silver (she/her/hers) – Duke University

  Co-Author: Leeor Hershkovich – Duke University

  Co-Author: Nishant Verma, PhD (he/him/his) – Verily Life Sciences

  Co-Author: Md Mobashir Hasan Shandhi (he/him/his) – Duke University

  Co-Author: Sarah A. Short, MPH (she/her/hers) – Verily Life Sciences

  Co-Author: Willy Nojopranoto – Verily Life Sciences

  Co-Author: Alessandra Breschi, PhD – Verily Life Sciences

  Co-Author: Kent Feng, MD – Stanford University

  Co-Author: Fatima Rodriguez – Stanford University

  Co-Author: Francois Haddad, MD – Stanford University Medical Center

  Co-Author: Svati Shah – Duke University Medical Center

  Co-Author: Kenneth Mahaffey – Stanford University

  Co-Author: Josh A. Granek, PhD – Duke University

  Last Author: Jessilyn Dunn, PhD – Duke University
• 10:00 AM - 11:00 AM EST

  Integrating Subcellular Molecular Heterogeneity through Rasterization for Enhanced Identification of Cellular Subtypes in Spatial Transcriptomics
  

  Presenting Author: Dee Velazquez, B.S (he/him/his) – Johns Hopkins University

  Primary Investigator: Jean Fan, PhD – Johns Hopkins University

  Co-Author: Caleb Hallinan – Johns Hopkins University
• 10:00 AM - 11:00 AM EST

  Meta-analysis of oxytocin receptor trafficking data reveals similar rates across GPCRs.
  

  Presenting Author: Keith L. Tukei – University of Washington

  Co-Author: Preeti Dubey, PhD – University of Washington

  Co-Author: YINGYE FANG, PhD (she/her/hers) – University of Washington

  Co-Author: Yunjeong Lee, PhD (she/her/hers) – University of Washington

  Co-Author: Erin Reinl, PhD – Washington University in St. Louis

  Co-Author: Antonina Frolova, MD, PhD – Washington University in St. Louis

  Co-Author: Sarah K. England, PhD (she/her/hers) – Washington University in St. Louis

  Primary Investigator: Princess Imoukhuede, PhD (she/her/hers) – University of Washington
• 10:00 AM - 11:00 AM EST

  Predicting Functional Recovery Following Spinal Cord Injury Utilizing Proteomic Datasets
  

  Presenting Author: Rebecca L. Riter, MS – Northwestern University

  Co-Author: Ansen Tan – Department of Biomedical Engineering, Northwestern University

  Co-Author: Christopher S. Ahuja, MD, PhD – Department of Surgery, Northwestern University Feinberg School of Medicine

  Co-Author: Najib El Tecle, MD – Department of Surgery, Northwestern University Feinberg School of Medicine

  Co-Author: Adam M. Sonabend, MD – Department of Surgery, Northwestern University Feinberg School of Medicine

  Primary Investigator: Guillermo Ameer – 1 Department of Biomedical Engineering, Northwestern University, 2 Center for Advanced Regenerative Engineering (CARE), 3 Department of Surgery, Northwestern University Feinberg School of Medicine
• 10:00 AM - 11:00 AM EST

  Probability of target attainment to assess efficacy of Clarithromycin, Ethambutol, and Rifampicin to treat nontuberculous mycobacterium (NTM) infections
  

  Presenting Author: Trevor Shoaf – Purdue University

  Primary Investigator: Elsje Pienaar, PhD – Purdue University
• 10:00 AM - 11:00 AM EST

  Quantifying the Intercellular Mechanisms of Ebolavirus transmission using Multi-scale Agent-based Model
  

  Presenting Author: Himabindu Kovvali, MS (she/her/hers) – Purdue University

  Primary Investigator: Elsje Pienaar, PhD – Purdue University
• 10:00 AM - 11:00 AM EST

  SJD: Structured Joint Decomposition and Projection for Multi-omics Data
  

  Presenting Author: Guangyan Li, MS (she/her/hers) – Broad Institute of Harvard and MIT

  Co-Author: Huan Chen, PhD – Meta

  Last Author: Carlo Colantuoni, PhD – Johns Hopkins university

  Primary Investigator: Brian Caffo, PhD (he/him/his) – Johns Hopkins University
• 10:00 AM - 11:00 AM EST

  STAT1 multiplexes pro- and anti-cancer signaling through a temporally controlled pulse of phosphorylation
  

  Presenting Author: Ranya K. A. Virk, PhD (she/her/hers) – University of California, San Francisco

  Co-Author: Xiaoxiao Sun – University of California, San Francisco

  Co-Author: Sigurd Angenent – University of Wisconsin, Madison

  Co-Author: Lani Wu – University of California, San Francisco

  Last Author: Steven Altschuler – University of California, San Francisco